57 `groupedHyperframe`

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Examples in Chapter 57 Require

library(groupedHyperframe)

Chapter 57 outlines the S3 methods currently not planned for the class 'groupedHyperframe' (Chapter 25).

57.1 Use `groupedHyperframe` as `grouped_ppp()` input

Listing 57.2 creates a grouped hyper data frame lung_g2 which retains the \(x\)- and \(y\)-coords,

Listing 57.1: Example: lung_g2 retaining \(x\)- and \(y\)-coords

lung_g2 = wrobel_lung |>
  within.data.frame(expr = {
    dapi = NULL
  }) |>
  aggregate2hyper(by = ~ patient_id/image_id)
# Hypercolumn(s) x, y, hladr, phenotype created!

Listing 57.2: Example: lung_g2 retaining \(x\)- and \(y\)-coords

lung_g2
# Grouped Hyper Data Frame: ~patient_id
# 
# 3 patient_id
# 
#             image_id    patient_id gender    OS age         x         y     hladr phenotype
# 1  [36953,13765].im3 #03 2-080-378      M   176  84 (numeric) (numeric) (numeric)  (factor)
# 2  [39206,15250].im3 #03 2-080-378      M   176  84 (numeric) (numeric) (numeric)  (factor)
# 3  [40242,17359].im3 #03 2-080-378      M   176  84 (numeric) (numeric) (numeric)  (factor)
# 4  [40863,16444].im3 #03 2-080-378      M   176  84 (numeric) (numeric) (numeric)  (factor)
# 5  [40864,18015].im3 #01 0-889-121      F 3488+  85 (numeric) (numeric) (numeric)  (factor)
# ✂️ --- output truncated --- ✂️

A curious reader may wonder, is it possible to create a grouped hyper data frame with ppp-hypercolumn(s), from a grouped hyper data frame? In other words, can we convert the grouped hyper data frame lung_g2 into something similar to the grouped hyper data frame s (Section 3.1)? Unfortunately, the author does not implement such functionality for package groupedHyperframe (v0.4.0, GPL-2).

57.1 Use groupedHyperframe as grouped_ppp() input

57.1 Use `groupedHyperframe` as `grouped_ppp()` input