Allaire, JJ, and Christophe Dervieux. 2024.
quarto: R Interface to
Quarto Markdown Publishing System.
https://CRAN.R-project.org/package=quarto.
Allaire, JJ, Yihui Xie, Christophe Dervieux, et al. 2025.
rmarkdown: Dynamic Documents for
R.
https://github.com/rstudio/rmarkdown.
Bache, Stefan Milton, and Hadley Wickham. 2025.
magrittr: A Forward-Pipe Operator for
R.
https://CRAN.R-project.org/package=magrittr.
Baddeley, Adrian, Peter J. Diggle, Andrew Hardegen, Thomas Lawrence,
Robin K. Milne, and Gopalan Nair. 2014.
“On Tests of Spatial
Pattern Based on Simulation Envelopes.” Ecological
Monographs 84 (3): 477–89.
https://doi.org/10.1890/13-2042.1.
Baddeley, Adrian, Ege Rubak, Suman Rakshit, and Gopalan Nair. 2025.
ROC Curves for Spatial Point Patterns and
Presence-Absence Data.
https://doi.org/10.48550/arXiv.2506.03414.
Baddeley, Adrian, Ege Rubak, and Rolf Turner. 2015.
Spatial Point
Patterns: Methodology and Applications with R.
Chapman; Hall/CRC Press.
https://www.routledge.com/Spatial-Point-Patterns-Methodology-and-Applications-with-R/Baddeley-Rubak-Turner/p/book/9781482210200/.
Baddeley, Adrian, and Rolf Turner. 2005.
“spatstat: An R Package for Analyzing
Spatial Point Patterns.” Journal of Statistical Software
12 (6): 1–42.
https://doi.org/10.18637/jss.v012.i06.
Becker, Richard A., John M. Chambers, and Allan R. Wilks. 1988.
The
New S Language. 1st ed. Chapman; Hall/CRC.
https://doi.org/10.1201/9781351074988.
Bengtsson, Henrik. 2025.
matrixStats:
Functions That Apply to Rows and Columns of Matrices (and to
Vectors).
https://CRAN.R-project.org/package=matrixStats.
Borchers, Hans W. 2025.
pracma:
Practical Numerical Math Functions.
https://CRAN.R-project.org/package=pracma.
Cameron, Allan, and Teun van den Brand.
2025.
geomtextpath: Curved Text in ggplot2.
https://CRAN.R-project.org/package=geomtextpath.
Csárdi, Gábor. 2025.
cli: Helpers for
Developing Command Line Interfaces.
https://CRAN.R-project.org/package=cli.
Csárdi, Gábor, and Jim Hester. 2025.
pak: Another Approach to Package
Installation.
https://CRAN.R-project.org/package=pak.
Csárdi, Gábor, Jim Hester, Hadley Wickham, Winston Chang, Martin Morgan,
and Dan Tenenbaum. 2024.
remotes:
R Package Installation from Remote Repositories, Including
’GitHub’.
https://CRAN.R-project.org/package=remotes.
Cui, Erjia, Ciprian M. Crainiceanu, and Andrew Leroux. 2021.
“Additive Functional Cox Model.” Journal of
Computational and Graphical Statistics 30 (3): 780–93.
https://doi.org/10.1080/10618600.2020.1853550.
Diggle, Peter. 1985.
“A Kernel Method for Smoothing Point Process
Data.” Journal of the Royal Statistical Society: Series
C 34 (2): 138–47.
https://doi.org/10.2307/2347366.
Gellar, Jonathan E., Elizabeth Colantuoni, Dale M. Needham, and Ciprian
M. Crainiceanu. 2015.
“Cox Regression Models with Functional
Covariates for Survival Data.” Statistical Modelling 15
(3): 256–78.
https://doi.org/10.1177/1471082X14565526.
Grolemund, Garrett. 2014.
Hands-on Programming with
R. O’Reilly Media, Inc.
https://www.oreilly.com/library/view/hands-on-programming-with/9781449359089/.
Hartigan, John A., and M. A. Wong. 1979.
“A K-Means Clustering
Algorithm.” Journal of the Royal Statistical Society: Series
C (Applied Statistics) 28 (1): 100–108.
https://doi.org/10.2307/2346830.
Henry, Lionel, and Hadley Wickham. 2026.
rlang: Functions for Base Types and Core
R and Tidyverse Features.
https://CRAN.R-project.org/package=rlang.
Hothorn, Torsten, Kurt Hornik, and Achim Zeileis. 2006.
“Unbiased
Recursive Partitioning: A Conditional Inference Framework.”
Journal of Computational and Graphical Statistics 15 (3):
651–74.
https://doi.org/10.1198/106186006X133933.
Hubert, Lawrence J., and Reginald G. Golledge. 1982.
“Measuring
Association Between Spatially Defined Variables: Tjøstheim’s Index and
Some Extensions.” Geographical Analysis 14 (3): 273–78.
https://doi.org/10.1111/j.1538-4632.1982.tb00077.x.
James, Gareth M. 2002.
“Generalized Linear Models with Functional
Predictors.” Journal of the Royal Statistical Society Series
B: Statistical Methodology 64 (3): 411–32.
https://doi.org/10.1111/1467-9868.00342.
Kuhn, Max. 2008.
“Building Predictive Models in R
Using the caret Package.” Journal
of Statistical Software 28 (5): 1–26.
https://doi.org/10.18637/jss.v028.i05.
Maechler, Martin, Peter Rousseeuw, Anja Struyf, Mia Hubert, and Kurt
Hornik. 2025.
cluster: Cluster Analysis
Basics and Extensions.
https://CRAN.R-project.org/package=cluster.
Matérn, Bertil. 1986.
Spatial Variation. Springer.
https://doi.org/10.1007/978-1-4615-7892-5.
McLean, Mathew W., Giles Hooker, Ana-Maria Staicu, Fabian Scheipl, and
David Ruppert. 2014.
“Functional Generalized Additive
Models.” Journal of Computational and Graphical
Statistics 23 (1): 249–69.
https://doi.org/10.1080/10618600.2012.729985.
Mersmann, Olaf. 2024.
microbenchmark:
Accurate Timing Functions.
https://CRAN.R-project.org/package=microbenchmark.
Microsoft Corporation, and Steve Weston. 2022a.
doParallel: Foreach Parallel Adaptor for the parallel Package.
https://CRAN.R-project.org/package=doParallel.
Microsoft Corporation, and Steve Weston. 2022b.
foreach: Provides Foreach Looping Construct.
https://CRAN.R-project.org/package=foreach.
Myllymäki, Mari, and Tomáš Mrkvička. 2024.
“GET:
Global Envelopes in R.” Journal of Statistical
Software 111 (3): 1–40.
https://doi.org/10.18637/jss.v111.i03.
Myllymäki, Mari, Tomáš Mrkvička, Pavel Grabarnik, Henri Seijo, and Ute
Hahn. 2016.
“Global Envelope Tests for Spatial Processes.”
Journal of the Royal Statistical Society Series B: Statistical
Methodology 79 (2): 381–404.
https://doi.org/10.1111/rssb.12172.
Pedersen, Thomas Lin. 2025.
patchwork:
The Composer of Plots.
https://CRAN.R-project.org/package=patchwork.
Penttinen, Antti, Dietrich Stoyan, and Helena M. Henttonen. 1992.
“Marked Point Processes in Forest Statistics.” Forest
Science 38 (4): 806–24.
https://doi.org/10.1093/forestscience/38.4.806.
Pinheiro, José, Douglas Bates, and R Core Team. 2025.
nlme: Linear and Nonlinear Mixed Effects
Models.
https://CRAN.R-project.org/package=nlme.
Posit Team. 2026.
RStudio: Integrated Development
Environment for R. Posit Software, PBC.
https://posit.co/.
R Core Team. 2026.
R: A Language and Environment for
Statistical Computing. R Foundation for Statistical Computing.
https://www.R-project.org/.
Reiss, Philip T., Jeff Goldsmith, Han Lin Shang, and R. Todd Ogden.
2017.
“Methods for Scalar-on-Function Regression.”
International Statistical Review 85 (2): 228–49.
https://doi.org/10.1111/insr.12163.
Robin, Xavier, Natacha Turck, Alexandre Hainard, et al. 2011.
“pROC: An Open-Source Package for
R and S+ to Analyze and Compare ROC
Curves.” BMC Bioinformatics 12: 77.
https://doi.org/10.1186/1471-2105-12-77.
Schlather, Martin, Jr Ribeiro Paulo J., and Peter J. Diggle. 2003.
“Detecting Dependence Between Marks and Locations of Marked Point
Processes.” Journal of the Royal Statistical Society Series
B: Statistical Methodology 66 (1): 79–93.
https://doi.org/10.1046/j.1369-7412.2003.05343.x.
Sievert, Carson. 2020.
Interactive Web-Based Data Visualization with
R, plotly, and shiny. Chapman; Hall/CRC.
https://plotly-r.com.
Stoyan, Helga, and Dietrich Stoyan. 1994.
Fractals, Random Shapes
and Point Fields: Methods of Geometrical Statistics. John Wiley;
Sons.
https://www.wiley.com/Fractals%2C+Random+Shapes+and+Point+Fields%3A+Methods+of+Geometrical+Statistics-p-9780471937579.
Therneau, Terry M. 2026.
A Package for Survival Analysis in
R.
https://CRAN.R-project.org/package=survival.
Therneau, Terry, and Beth Atkinson. 2025.
rpart: Recursive Partitioning and Regression
Trees.
https://CRAN.R-project.org/package=rpart.
Tjøstheim, Dag. 1978.
“A Measure of Association for Spatial
Variables.” Biometrika 65 (1): 109–14.
https://doi.org/10.1093/biomet/65.1.109.
Vallejos, R., F. Osorio, and M. Bevilacqua. 2020.
Spatial
Relationships Between Two Georeferenced Variables: With Applications in
R. Springer.
http://srb2gv.mat.utfsm.cl/.
Van Lieshout, M. N. M., and A. J. Baddeley. 1999.
“Indices of
Dependence Between Types in Multivariate Point Patterns.”
Scandinavian Journal of Statistics 26 (4): 511–32.
https://doi.org/10.1111/1467-9469.00165.
Venables, William N., and Brian D. Ripley. 2002.
Modern Applied
Statistics with S. Fourth. Springer.
https://www.stats.ox.ac.uk/pub/MASS4/.
Wälder, Olga, and Dietrich Stoyan. 1996.
“On Variograms in Point
Process Statistics.” Biometrical Journal 38 (8):
895–905.
https://doi.org/10.1002/bimj.4710380802.
Wickham, Hadley. 2016.
ggplot2: Elegant
Graphics for Data Analysis. Springer-Verlag New York.
https://ggplot2.tidyverse.org.
Wickham, Hadley. 2019a.
Advanced R. 2nd ed.
Chapman & Hall/CRC.
https://adv-r.hadley.nz/.
Wickham, Hadley. 2019b.
sloop: Helpers
for ’OOP’ in R.
https://CRAN.R-project.org/package=sloop.
Wickham, Hadley, Peter Danenberg, Gábor Csárdi, and Manuel Eugster.
2025.
roxygen2: In-Line Documentation
for R.
https://CRAN.R-project.org/package=roxygen2.
Wickham, Hadley, Thomas Lin Pedersen, and Dana Seidel. 2025.
scales: Scale Functions for Visualization.
https://CRAN.R-project.org/package=scales.
Wood, Simon N. 2003.
“Thin-Plate Regression Splines.”
Journal of the Royal Statistical Society B: Statistical
Methodology 65 (1): 95–114.
https://doi.org/10.1111/1467-9868.00374.
Wood, Simon N. 2006.
“Low-Rank Scale-Invariant Tensor Product
Smooths for Generalized Additive Mixed Models.”
Biometrics 62 (4): 1025–36.
https://doi.org/10.1111/j.1541-0420.2006.00574.x.
Wood, Simon N. 2017. Generalized Additive
Models: An Introduction with R. 2nd ed.
Chapman; Hall/CRC.
Xie, Yihui. 2014. “knitr: A
Comprehensive Tool for Reproducible Research in R.”
In Implementing Reproducible Computational Research, edited by
Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman;
Hall/CRC.
Xie, Yihui. 2015.
Dynamic Documents with R and knitr. 2nd ed. Chapman; Hall/CRC.
https://yihui.org/knitr/.
Xie, Yihui. 2025.
knitr: A
General-Purpose Package for Dynamic Report Generation in
R.
https://yihui.org/knitr/.
Xie, Yihui. 2026.
xfun: Supporting
Functions for Packages Maintained by Yihui Xie.
https://CRAN.R-project.org/package=xfun.
Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018.
R Markdown:
The Definitive Guide. Chapman; Hall/CRC.
https://bookdown.org/yihui/rmarkdown.
Xie, Yihui, Christophe Dervieux, and Emily Riederer. 2020.
R
Markdown Cookbook. Chapman; Hall/CRC.
https://bookdown.org/yihui/rmarkdown-cookbook.